BUG: Catch error if image has more than two dimensions

[wiegraebe]

• [x] I have checked that this issue has not already been reported.

• [x] I have confirmed this bug exists on the latest version of microscope_automation.

---

Description

At https://github.com/aics-int/microscope_automation/blob/abecb45022636498489af32098b5ebbfee689661/microscope_automation/samples/interactive_location_picker_pyqtgraph.py#L114 code crashes if self.image.shape has more than two dimensions

In the standard workflow, image should have only two dimensions. The error occurred when image was returned with a third dimension of size 1. A short-term fix could be to squeeze the np array: self.image.squeeze().shape

Expected Behavior

Be able to handle any number of dimensions.

Reproduction

Run code with preferences file Pipeline5.2.yml

[fletchapin]

Another example of this occurs in:

https://github.com/aics-int/microscope_automation/blob/abecb45022636498489af32098b5ebbfee689661/microscope_automation/microscope_automation.py#L2110

Short term solution: imsave(image_path, image_data_save.squeeze().T, cmap="gray")