aidenlab / 3d-dna

3D de novo assembly (3D DNA) pipeline
MIT License
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What is the difference between 0.hic, 0.assembly and rawchrom.hic, rawchrom.assembly? #168

Open XXH123a opened 1 year ago

XXH123a commented 1 year ago

Dear developers. Sorry to bother you again, but what is the difference between the two pairs of files I get when I run run-asm-pipeline.sh -r 0? Which pair of files j should I juicerbox? Also should I remove the area inside this chromosome indicated by the blue circle?

750cb4e24ffff3803f0fb3743481237 I look forward to your guidance and thank you most sincerely!