Open ersgupta opened 4 years ago
Hello Saurabh,
the script you are pointing to is not relevant in this case. The rainbow track is created from the chrom-length assembly to draft. Make sure you are passing the chrom-length as ref.assembly and original draft assembly as draft.assembly
annotation color is not the rainbow color. The color is the next column, from 0 to 1. You can map it to continuous color however you want.
Olga
Thanks.
Saurabh
Saurabh,
Chromosome-length assembly in this script is assumed to be a continuous gradient from 0 to 1 (for the first -c
Olga
Thanks Olga, I will try it out and get back to you.
Hi Olga,
I am trying to use the supp/make-rainbow-tracks-assembly.sh script to make tracks.bedpe file to visualise the chromogram (similar to Fig 1 from Dudchenko et al 2017). I have couple of points regarding this, could you please address these?
Thanks Saurabh