aidenlab / Juicebox

Visualization and analysis software for Hi-C data -
https://aidenlab.org/juicebox
MIT License
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[BUG] import the review.assembly does not work #1027

Open YaoZhou89 opened 9 months ago

YaoZhou89 commented 9 months ago

Describe the bug Our genome size is ~4Gb and the scale factor is 2. When I load the .hic file, the default scale factor is set to 3. Next, I imported the .assemlby file and set the scale factor to 2. Then, I continued to import the .review.assembly, the scale factor was changed to 3 again and the heatmap was not changed as expected. Although I set the scale factor to 2 again, heatmap is still the original one.

To Reproduce Steps to reproduce the behavior:

  1. Go to 'file -> open ' and load the local .hic file
  2. Go to 'Assembly -> Import Map Assembly' and import the original .assembly file.
  3. Go to 'Assembly -> Import Modified Assembly' and import the manually reviewed assembly file (.review.assembly)
  4. Scroll down to 'Set Scale' and set the to 2
  5. See error (the heatmap keep the same)

Expected behavior The heatmap should change according to the .review.assembly file.

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Additional context Add any other context about the problem here.

paka14 commented 7 months ago

Yes, I also met the same situation. Is it a bug? How can I solve it?