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aidenlab / Juicebox

Visualization and analysis software for Hi-C data -
https://aidenlab.org/juicebox
MIT License
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when you move a chr you lose information [BUG] #992

Open ArthurPERE opened 2 years ago

ArthurPERE commented 2 years ago

Describe the bug When you begin to move around a chr or a scafold, you have a blank region that appear in the map. When you pass the cursor in it there is 0 observed value. It does not work with all the chromosomes.

To Reproduce

Click on a chr move it around there is a big blank portion that appear.

Expected behavior Not to lose any contact information.

Screenshots debut_bug fin_bug

And if I do the opposite : bug_2_debut bug_2_mod

Desktop

Additional context I produce the map and the assembly with the tools yahs.

ArthurPERE commented 2 years ago

Hello,

I think i got it, the file .hic that I generated was corrupted by juicer_tools who does not finished the job, because we can not use yahs with juicer_tools version 2, we must use version 1 of juicer_tools for that. And with version 1, it is working

Why juicebox does not say that the file is corrupted, and why the blank appeared, when we move a scaffold around ?

Thank you