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aidenlab / juicer

A One-Click System for Analyzing Loop-Resolution Hi-C Experiments
http://aidenlab.org
MIT License
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juicer//scripts/common/collisions_dedup_rearrange_cols.awk:19: fatal: 3 is invalid as number of arguments for asort #172

Closed forrwill closed 4 years ago

forrwill commented 4 years ago

my scripts errors with the information of "juicer//scripts/common/collisions_dedup_rearrange_cols.awk:19: fatal: 3 is invalid as number of arguments for asort", and what's the reason of the error

forrwill commented 4 years ago

and my collision.txt is empty, and I don't know why

forrwill commented 4 years ago

users 538 Jul 7 18:07 header users 78G Jul 8 03:25 merged_sort.txt users 169M Jul 8 04:40 opt_dups.txt users 44G Jul 8 04:40 dups.txt users 34G Jul 8 04:40 merged_nodups.txt users 1.4K Jul 8 04:46 inter_30.txt users 1.9K Jul 8 05:03 inter.txt users 15K Jul 8 05:03 inter_hists.m users 8.6G Jul 8 05:05 abnormal.sam users 7.7G Jul 8 05:07 unmapped.sam users 1 Jul 8 05:12 collisions_nodups.txt users 1 Jul 8 14:10 collisions.txt users 326M Jul 8 14:17 inter.hic

nchernia commented 4 years ago

This error is due to your awk / gawk being an older version. It should be at least 4.0.2.

As for no collisions, this can happen if you don't have mapq >= 10 reads in your "abnormal.sam" file.