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aidenlab / juicer

A One-Click System for Analyzing Loop-Resolution Hi-C Experiments
http://aidenlab.org
MIT License
410 stars 181 forks source link

producing raw interaction frequency matrices from .hic #175

Closed rdali closed 4 years ago

rdali commented 4 years ago

Hello,

I saw that juicer can produce O/E pearson matrices from .hic files using the "pearson" module. However, I am interested in getting the raw IF matrices from the .hic files. Can juicer produce those?

Thank you!

sa501428 commented 4 years ago

Are you looking for this: https://github.com/aidenlab/Juicer/wiki/Data-Extraction

Also, general questions are preferred on the forum and help serve as FAQs that way: https://aidenlab.org/forum.html

rdali commented 4 years ago

Noted about the forum.

That is exactly what I needed. Thank you!