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aidenlab / juicer

A One-Click System for Analyzing Loop-Resolution Hi-C Experiments
http://aidenlab.org
MIT License
410 stars 181 forks source link

The problem of juicer_tools.jar #230

Closed phil622 closed 3 years ago

phil622 commented 3 years ago

When i running the juicer .sh script in the stage of final, it tip this:Error: Unable to access jarfile /public1/home/chenwy/app/juicer/scripts/common/juicer_tools.jar why it happened?

phil622 commented 3 years ago

and i use the command:java -jar juicer_tools.jar, it tips that this is a invalid or corrupt jarfile.

phil622 commented 3 years ago

l have figured it out. Because the juicer_tools is not the juicer_tools.jar. The juicer_tools script is just a trigger for juicer_tools.jar. So I download the juicer_tools.jar and it can be run now. But i don't know why the juicer_tools.jar is not included in the juicer package.

olechnwin commented 3 years ago

@phil622 thank you for posting this. I didn't realize either that juicer_tools is a script. You helped me solved my related problem.

nchernia commented 3 years ago

You should alias the juicer tools jar to the latest jar from the Download page. GitHub is for code not executable files.

On Tue, Jul 13, 2021 at 1:53 PM olechnwin @.***> wrote:

@phil622 https://github.com/phil622 thank you for posting this. I didn't realize either that juicer_tools is a script. You helped me solved my related problem.

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phil622 commented 3 years ago

ok，thank you for your help