nchernia
commented
3 years ago Yes they should be the same. It was for a sanity check and stayed.
More documentation here:
https://github.com/aidenlab/juicer/wiki/Pre#long-format
On Tue, Aug 3, 2021 at 8:39 PM Joaquin @.***> wrote:
I am currently working with a Merged_nodups.txt file, where can I find documentation on the columns of this file? I've seen that the juicertools pre says that the Merged_nodups.txt file can be used directly but I want to understand the Merged_nodups.txt file a little more. What I'm most interested in knowing at this moment is why there are two readname columns? Don't readpairs always have the same name?
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joreynajr
I am currently working with a Merged_nodups.txt file, where can I find documentation on the columns of this file? I've seen that the juicertools pre says that the Merged_nodups.txt file can be used directly but I want to understand the Merged_nodups.txt file a little more. What I'm most interested in knowing at this moment is why there are two readname columns? Don't readpairs always have the same name?