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aidenlab / juicer

A One-Click System for Analyzing Loop-Resolution Hi-C Experiments
http://aidenlab.org
MIT License
413 stars 181 forks source link

merge: invalid option -- 'c' #278

Open worldxiao opened 2 years ago

worldxiao commented 2 years ago

This problem (-: Aligning files matching /home/xuxiao/biosoftware/genemoe/asemmbly/juicer/work/test/fastq/_R.fastq* to genome /home/xuxiao/biosoftware/genemoe/asemmbly/juicer/references/test/contigs.fa with no fragment delimited maps. merge: invalid option -- 'c' merge: invalid option -- 't' open: No such file or directory [bam_merge_core] fail to open file /home/xuxiao/biosoftware/genemoe/asemmbly/juicer/work/test/aligned/merged_sort.bam ***! Some problems occurred somewhere in creating sorted align files.

seasonkk77 commented 1 year ago

hello，is this problem solved？I have the same problem and need some help，thx

ChenJH-scau commented 5 months ago

hello，is this problem solved？I have the same problem and need some help，thx