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aidenlab / juicer

A One-Click System for Analyzing Loop-Resolution Hi-C Experiments
http://aidenlab.org
MIT License
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Take long time to generate .hic file #281

Open starnight0 opened 2 years ago

starnight0 commented 2 years ago

Hello, I run juicer on a 5G bp genome to place contigs using HiC data, but it take weeks to generate the interaction matrix (.hic file). It seems there is no error and the file is increasing stably. Thanks.

--Zelin

sa501428 commented 2 years ago

You are likely falling into this issue. https://github.com/aidenlab/juicer/wiki/FAQs#juicer-pre-is-taking-a-very-long-time https://groups.google.com/g/3d-genomics/c/cE9DPdPGzdY/m/ZfvE9Dd9AAAJ