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aidenlab / juicer

A One-Click System for Analyzing Loop-Resolution Hi-C Experiments
http://aidenlab.org
MIT License
402 stars 180 forks source link

Use bwa-mem2 mem to accelerate the pipeline #288

Open tinyfallen opened 1 year ago

tinyfallen commented 1 year ago

Hi dear developers,

Thanks for your great work! I noticed the bwa mem had an updated version bwa-mem2 mem which rapidly accelerate the mapping step to half the time before without loss of accuracy. If you get some time, you could test the new version and it may not be a time-consuming task.

Best~

apredeus commented 1 year ago

Just stopped by to post the same thing. Would be pretty helpful for a typical large Hi-C dataset.