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aidenlab / juicer

A One-Click System for Analyzing Loop-Resolution Hi-C Experiments
http://aidenlab.org
MIT License
402 stars 180 forks source link

"bwa -mem SP5M" error #298

Open woaishiye opened 1 year ago

woaishiye commented 1 year ago

Hi author: I am now using juicer to dealing my HI-C data, but when i run the script, i got an error, which is "invalid argument：mem --"5"". I opened the juicer.sh and found that in line 364, there is a bwa parameter "bwa -mem SP5M" that i don't understand. So could you please explain to me the meaning of "SP5M". Any help from you will be appreciated. Looking forward to hearing from you.re changes to the codebase. Questions, discussions, etc. should be posted to the forum: aidenlab.org/forum.html

linshengnan09 commented 7 months ago

hi, have you solved this problem? I encountered the same error.