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aidenlab / juicer

A One-Click System for Analyzing Loop-Resolution Hi-C Experiments
http://aidenlab.org
MIT License
399 stars 181 forks source link

How to modify the juicer.sh script #317

Open jacolmen opened 12 months ago

jacolmen commented 12 months ago

Dear developers,

Probably this is a trivial question but I think it is useful for new users of Juicer (such as me). What lines do I have to modify in the juicer.sh script in order to make it compatible with the cluser I use (SLURM cluster)? I suppose that are the "load" lines, but those lines are repeated many times. For example, lines 82-85, but then lines 87-90, and 119-123. Where do I have to specify the name of the partition I will be using? My cluster have different partitions and depending of the one I choose I have to write commands/paths to load the modules.

I will appreciate any help with this issue,

Javier

MahdiSayadSadr commented 12 months ago

Hi Javier,

Thank you for your question, I was wondering if you wouldn't mind posting this question to our forum HERE. It would help me keep track of your inquiry so I can be sure to get to it.

Thank you for your time,

Mahdi

jacolmen commented 12 months ago

Hi Mahdi,

I tried to join the group but for some reason I don't appear as a member, so when I posted my conversation was deleted.

Thanks