Same chromosome, same hic-data, different scaffolding results

aidenlab / juicer

A One-Click System for Analyzing Loop-Resolution Hi-C Experiments

http://aidenlab.org

MIT License

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Same chromosome, same hic-data, different scaffolding results #320

Open anxuan-web opened 11 months ago

anxuan-web commented 11 months ago

Hi， I scaffold the same genome using 3d-dna and yahs software. Their results on the assembly of this chromosome are inconsistent. Here are heatmaps. I want to know which result is more confident.