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aidenlab / juicer

A One-Click System for Analyzing Loop-Resolution Hi-C Experiments
http://aidenlab.org
MIT License
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awk: fatal: cannot open file /splits/hic.fastq.gz_norm.txt' for reading (No such file or directory) #322

Open fengyuanli304 opened 1 year ago

fengyuanli304 commented 1 year ago

Hi,

I am getting this error while running the juicer pipeline on slurm:

pkurun-cnlong 1 20 bash /lfy/software/juicer/scripts/juicer.sh -g curated_seq80.FINAL -s MboI -z reference/curated_seq80.FINAL.fasta -y reference/curated_seq80.FINAL_MboI.txt -p reference/curated_seq80.FINAL.chrom_MboI.size -D /lfy/software/juicer/ -t 20

I met the problem: awk: fatal: cannot open file `/splits/hic.fastq.gz_norm.txt' for reading (No such file or directory)

Best,

Fengyuan bas142208_18774057.txt