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aidenlab / juicer

A One-Click System for Analyzing Loop-Resolution Hi-C Experiments
http://aidenlab.org
MIT License
399 stars 181 forks source link

After manual correction of juicebox convert to fasta #327

Open ABDULLAHGUJJAR opened 10 months ago

ABDULLAHGUJJAR commented 10 months ago

Hi Juicebox team,

java -Xmx32G -jar juicer_tools.2.20.00.jar post -o output abdullah_manual_out_JBAT.review.assembly out_JBAT.liftover.agp yahs.out_scaffolds_final.fa

WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance. WARN [2023-09-07T20:51:58,793] [Globals.java:138] [main] Development mode is enabled Exception in thread "main" jargs.gnu.CmdLineParser$UnknownOptionException: Unknown option '-o' at jargs.gnu.CmdLineParser.parse(CmdLineParser.java:475) at jargs.gnu.CmdLineParser.parse(CmdLineParser.java:426) at juicebox.tools.HiCTools.main(HiCTools.java:67)

please can you guide me about this error. Thanks