insufficient memory for the Java Runtime Environment - CPU

aidenlab / juicer

A One-Click System for Analyzing Loop-Resolution Hi-C Experiments

http://aidenlab.org

MIT License

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Open james-vincent opened 8 months ago

james-vincent commented 8 months ago

Are you sure this is a bug? Not sure

Describe the bug CPU version juicer.sh gets java memory options set like so:

Picked up _JAVA_OPTIONS: -Xmx150000m -Xms150000m

Seems to be no way to override this as it is hard coded in the script: export _JAVA_OPTIONS="-Xmx150000m -Xms150000m"

Running CPU version on the small test data set MiSeq GM12878.

Centos 7.9, java 1.8 , 32G memory

BRNiu commented 5 months ago

Hi! Could you let me know if you have any solution?