aidenlab / juicer

A One-Click System for Analyzing Loop-Resolution Hi-C Experiments
http://aidenlab.org
MIT License
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Juicer changes chromosome names #346

Open jeramiahsmith opened 4 months ago

jeramiahsmith commented 4 months ago

We are trying to view a juicer .hic file on our UCSC assembly hub, however juicer has modified the names of our reference sequences (capitalized and removed "chr") such hat they are incompatible with the existing reference. Is there a way to fix this or modify the behavior of juicer on the front end?

sa501428 commented 4 months ago

This issue was fixed a while back; you can find the latest jars here: https://github.com/aidenlab/Juicebox/releases