my command is : ./juicer.sh -z ./ga.fasta -p ./ga.length -y ./ga_MboI.txt -d /home/ga -D /home/software/juicer -g ga -s MboI -t 40
My question is that when I download data from the Internet, I often do not know what endonuclease is used, so can I tell from the output of this command whether the name of the enzyme I selected is correct.
my command is : ./juicer.sh -z ./ga.fasta -p ./ga.length -y ./ga_MboI.txt -d /home/ga -D /home/software/juicer -g ga -s MboI -t 40
My question is that when I download data from the Internet, I often do not know what endonuclease is used, so can I tell from the output of this command whether the name of the enzyme I selected is correct.
Output: inter_30.txt
Sequenced Read Pairs: 395,348,657 Normal Paired: 178,269,979 (45.09%) Chimeric Paired: 193,107,567 (48.84%) Chimeric Ambiguous: 17,990,761 (4.55%) Unmapped: 5,980,350 (1.51%) Ligation Motif Present: 128,140 (0.03%) Alignable (Normal+Chimeric Paired): 371,377,546 (93.94%) Unique Reads: 323,068,010 (81.72%) PCR Duplicates: 48,309,536 (12.22%) Optical Duplicates: 0 (0.00%) Library Complexity Estimate: 1,300,794,258