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aidenlab / juicer

A One-Click System for Analyzing Loop-Resolution Hi-C Experiments
http://aidenlab.org
MIT License
418 stars 183 forks source link

Thanks - someone else noticed this too and made a pull request and I wrote there as well. See https://github.com/theaidenlab/juicer/pull/26 #352

Open Djangodu opened 4 months ago

Djangodu commented 4 months ago 
          Thanks - someone else noticed this too and made a pull request and I wrote there as well.  See https://github.com/theaidenlab/juicer/pull/26

We're keeping this structure for now and you should soft-link, see https://github.com/theaidenlab/juicer/wiki/Installation#quick-start

Originally posted by @theaidenlab in https://github.com/aidenlab/juicer/issues/30#issuecomment-329268611

Djangodu commented 4 months ago

Dear, It is twice I make genome assembly work with juicer.sh, the first time I finish it very well, but this time I also miss this Path issue for CPU script execution problem. As you last suggestion, the first time I did the sort-link, also this time, but it didn't work with this operation. I don't know why it happened, and I just use the first time conda enviroment and the same juicer.sh version, the same juicer work file with the same soft-link, but didn't work.

at the begining, will found that:

/public/home/swun-duzhany/chromosome_assemble_annotation/JL-sheep_6.12.24/juicer/scripts/juicer.sh: line 358: /opt/juicer/scripts/common/countligations.sh: No such file or directory

and will end with like this：

***! Failure during chimera handling of /gpfs/gibbs/pi/ycga/mane/at2253/wangSung/20221019_HiC/AS-FB_HiC//splits/AS-FB-HiC_AHV5HHDSX3_L001_001.fastq.gz

I am try many times, and make soft-link, and download new version, but didn't work any more.

please help me, it is a little disappointed with this problem.