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aidenlab / juicer

A One-Click System for Analyzing Loop-Resolution Hi-C Experiments
http://aidenlab.org
MIT License
415 stars 183 forks source link

diploid.sh #78

Closed sa501428 closed 2 years ago

sa501428 commented 6 years ago

different files in the different system flavors (e.g. CPU vs UGER) or missing in others (SLURM)

nchernia commented 6 years ago

UGER is different from CPU for a reason - UGER launches jobs, CPU runs in a single thread. But it does need to be ported to SLURM.

On Sun, Sep 16, 2018 at 7:38 PM Muhammad Saad Shamim < notifications@github.com> wrote:

different files in the different system flavors (e.g. CPU vs UGER) or missing in others (SLURM)

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sa501428 commented 6 years ago

While I certainly expect CPU to look different from UGER, CPU still needs flags/parameters (right now things are hardcoded).