nchernia
commented
6 years ago There’s a new version since yesterday, is that what you used?
On Fri, Oct 19, 2018 at 3:20 PM briansaint notifications@github.com wrote:
Tried running APA on a file with the dev version of juicer tools but ran into the following issue.
Marss-MacBook-Pro:patient_maps mars$ java -jar juicer_tools.1.9.8_jcuda.0.8.jar apa HIC_inter_30.hic loops HIC_apa Reading file: HIC_inter_30.hic Processing APA for resolution 25000 Exception in thread "main" java.lang.NoClassDefFoundError: com/sun/java/swing/plaf/windows/WindowsLookAndFeel at com.jidesoft.plaf.LookAndFeelFactory.installJideExtension(LookAndFeelFactory.java:848) at com.jidesoft.plaf.LookAndFeelFactory.installJideExtension(LookAndFeelFactory.java:633) at com.jidesoft.plaf.LookAndFeelFactory.installJideExtension(LookAndFeelFactory.java:598) at com.jidesoft.swing.JideButton.updateUI(JideButton.java:100) at java.desktop/javax.swing.AbstractButton.init(AbstractButton.java:2136) at java.desktop/javax.swing.JButton.(JButton.java:131) at java.desktop/javax.swing.JButton.(JButton.java:85) at com.jidesoft.swing.JideButton.(JideButton.java:82) at com.jidesoft.swing.JideButton.(JideButton.java:44) at juicebox.gui.MainViewPanel.(MainViewPanel.java:66) at juicebox.data.Dataset.getMatrix(Dataset.java:95) at juicebox.tools.clt.juicer.APA.runWithReturn(APA.java:276) at juicebox.tools.clt.juicer.APA.run(APA.java:205) at juicebox.tools.HiCTools.main(HiCTools.java:96) Caused by: java.lang.ClassNotFoundException: com.sun.java.swing.plaf.windows.WindowsLookAndFeel at java.base/jdk.internal.loader.BuiltinClassLoader.loadClass(BuiltinClassLoader.java:582) at java.base/jdk.internal.loader.ClassLoaders$AppClassLoader.loadClass(ClassLoaders.java:190) at java.base/java.lang.ClassLoader.loadClass(ClassLoader.java:499) ... 14 more
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sa501428
Tried running APA on a file with the dev version of juicer tools but ran into the following issue.
Marss-MacBook-Pro:patient_maps mars$ java -jar juicer_tools.1.9.8_jcuda.0.8.jar apa HIC_inter_30.hic loops HIC_apa Reading file: HIC_inter_30.hic Processing APA for resolution 25000 Exception in thread "main" java.lang.NoClassDefFoundError: com/sun/java/swing/plaf/windows/WindowsLookAndFeel at com.jidesoft.plaf.LookAndFeelFactory.installJideExtension(LookAndFeelFactory.java:848) at com.jidesoft.plaf.LookAndFeelFactory.installJideExtension(LookAndFeelFactory.java:633) at com.jidesoft.plaf.LookAndFeelFactory.installJideExtension(LookAndFeelFactory.java:598) at com.jidesoft.swing.JideButton.updateUI(JideButton.java:100) at java.desktop/javax.swing.AbstractButton.init(AbstractButton.java:2136) at java.desktop/javax.swing.JButton.(JButton.java:131)
at java.desktop/javax.swing.JButton.(JButton.java:85)
at com.jidesoft.swing.JideButton.(JideButton.java:82)
at com.jidesoft.swing.JideButton.(JideButton.java:44)
at juicebox.gui.MainViewPanel.(MainViewPanel.java:66)
at juicebox.data.Dataset.getMatrix(Dataset.java:95)
at juicebox.tools.clt.juicer.APA.runWithReturn(APA.java:276)
at juicebox.tools.clt.juicer.APA.run(APA.java:205)
at juicebox.tools.HiCTools.main(HiCTools.java:96)
Caused by: java.lang.ClassNotFoundException: com.sun.java.swing.plaf.windows.WindowsLookAndFeel
at java.base/jdk.internal.loader.BuiltinClassLoader.loadClass(BuiltinClassLoader.java:582)
at java.base/jdk.internal.loader.ClassLoaders$AppClassLoader.loadClass(ClassLoaders.java:190)
at java.base/java.lang.ClassLoader.loadClass(ClassLoader.java:499)
... 14 more