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aidenlab / straw

Extract data quickly from Juicebox via straw
MIT License
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Add function shown available bin/chromatin et.al #11

Closed xubeisi closed 7 years ago

xubeisi commented 7 years ago

hi, thank you guys for providing such useful tool! We are wondering is it possible to add options such as:

$ straw HEADER file.hic chromosomes 1 2 3 4 .... blocks BP 10000 20000 500000 ... blocks FRAG 1 5 10 ...

?

It would be very helpful for people who trying to get the info without trying and failing read it. Thank you!

nchernia commented 7 years ago

Hello,

I will look at adding that, for now try using the read Header script first.

https://github.com/theaidenlab/straw/blob/master/python/read_hic_header.py

Best Neva

On Wed, Mar 22, 2017 at 9:23 PM, Beisi Xu notifications@github.com wrote:

hi, thank you guys for providing such useful tool! We are wondering is it possible to add options such as:

$ straw HEADER file.hic chromosomes 1 2 3 4 .... blocks BP 10000 20000 500000 ... blocks FRAG 1 5 10 ...

?

It would be very helpful for people who trying to get the info without trying and failing read it. Thank you!

— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub https://github.com/theaidenlab/straw/issues/11, or mute the thread https://github.com/notifications/unsubscribe-auth/ABWiW4GfdUufj2PpBRtRGLUqL2A5cAsOks5roYNWgaJpZM4MlxTt .

-- Neva Cherniavsky Durand, Ph.D. Staff Scientist, Aiden Lab www.aidenlab.org

xubeisi commented 7 years ago

Thank you! that works!