Open mellofariam opened 2 years ago
If the file includes these normalizations, then yes. Just use INTER_KR
or INTER_SCALE
for the inter-balancing or GW_KR
or GW_SCALE
for genome-wide balancing. If you call it with KR
or SCALE
, it will use the intra-chromosomal balancing for the 2 chromosomes involved.
If the file doesn't include the normalizations, you'll want to balance the matrices with addnorm
.
What flavor/language are you working with?
I'm working with Python. I'll try that out! Thank you!
Reading the documentation I could not find any reference to those normalization procedures. I wonder if there is a way of using them.
Also, when an inter-chromosomal map is extracted with the balanced norm, which of the following procedures (if any) is used: inter-balancing or genome-wide balancing?