Add function for reading available normalizations from .hic file.

EricSDavis commented 2 years ago

Function to check which normalizations are available.

sa501428 commented 2 years ago

@cwenger can you check these new changes?

cwenger commented 2 years ago

@sa501428 Looks good!

> strawr::readHicChroms("https://github.com/aidenlab/Juicebox/blob/master/data/inter.hic?raw=true")
   index name    length
1      1    1 249250621
2     10   10 135534747
3     11   11 135006516
4     12   12 133851895
5     13   13 115169878
6     14   14 107349540
7     15   15 102531392
8     16   16  90354753
9     17   17  81195210
10    18   18  78077248
11    19   19  59128983
12     2    2 243199373
13    20   20  63025520
14    21   21  48129895
15    22   22  51304566
16     3    3 198022430
17     4    4 191154276
18     5    5 180915260
19     6    6 171115067
20     7    7 159138663
21     8    8 146364022
22     9    9 141213431
23     0  ALL   3098789
24    25   MT     16569
25    23    X 155270560
26    24    Y  59373566

aidenlab / straw

Add function for reading available normalizations from .hic file. #114