sa501428
commented
1 year ago What are the python and c++ versions on your system?
On Mon, Aug 22, 2022, 8:47 PM liudonghua @.***> wrote:
Describe the bug I tried to use pip to install this package on windows, but I got the following errors.
To Reproduce Steps to reproduce the behavior:
- set INCLUDE=%INCLUDE%;D:\apps\anaconda3\Library\include
- python -m pip install -U hic-straw
Expected behavior The installation should fine.
Screenshots
(plus) D:\code\python\hicplus>set INCLUDE=%INCLUDE%;D:\apps\anaconda3\Library\include
(plus) D:\code\python\hicplus>python -m pip install -U hic-straw
Requirement already satisfied: hic-straw in d:\apps\anaconda3\envs\plus\lib\site-packages (0.0.6)
Collecting hic-straw
Using cached hic-straw-1.3.1.tar.gz (18 kB)
Preparing metadata (setup.py) ... done
Collecting pybind11>=2.4
Using cached pybind11-2.10.0-py3-none-any.whl (213 kB)
Building wheels for collected packages: hic-straw
Building wheel for hic-straw (setup.py) ... error
error: subprocess-exited-with-error
× python setup.py bdist_wheel did not run successfully.
│ exit code: 1
╰─> [40 lines of output]
D:\apps\anaconda3\envs\plus\lib\site-packages\setuptools\installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer. warnings.warn( running bdist_wheel running build running build_ext building 'hicstraw' extension creating build creating build\temp.win-amd64-3.8 creating build\temp.win-amd64-3.8\Release creating build\temp.win-amd64-3.8\Release\src "C:\Program Files\Microsoft Visual Studio\2022\Community\VC\Tools\MSVC\14.33.31629\bin\HostX86\x64\cl.exe" /c /nologo /O2 /W3 /GL /DNDEBUG /MD -Ic:\users\liu.d.h\appdata\local\temp\pip-install-06_988jz\hic-straw_aa7b592d70914d3b886a3aa3d4054df1\.eggs\pybind11-2.10.0-py3.8.egg\pybind11\include -Ic:\users\liu.d.h\appdata\local\temp\pip-install-06_988jz\hic-straw_aa7b592d70914d3b886a3aa3d4054df1\.eggs\pybind11-2.10.0-py3.8.egg\pybind11\include -ID:\apps\anaconda3\envs\plus\include -ID:\apps\anaconda3\envs\plus\Include "-IC:\Program Files\Microsoft Visual Studio\2022\Community\VC\Tools\MSVC\14.33.31629\include" "-IC:\Program Files\Microsoft Visual Studio\2022\Community\VC\Tools\MSVC\14.33.31629\ATLMFC\include" "-IC:\Program Files\Microsoft Visual Studio\2022\Community\VC\Auxiliary\VS\include" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\10\\include\10.0.19041.0\\um" "-IC:\Program Files (x86)\Windows Kits\10\\include\10.0.19041.0\\shared" "-IC:\Program Files (x86)\Windows Kits\10\\include\10.0.19041.0\\winrt" "-IC:\Program Files (x86)\Windows Kits\10\\include\10.0.19041.0\\cppwinrt" "-IC:\Program Files (x86)\Windows Kits\NETFXSDK\4.8\include\um" -I%INCLUDE% -ID:\apps\anaconda3\Library\include -ID:\apps\anaconda3\Library\include /EHsc /Tpsrc/straw.cpp /Fobuild\temp.win-amd64-3.8\Release\src/straw.obj /EHsc /DVERSION_INFO=\\\"1.3.1\\\" straw.cpp C:\Users\Liu.D.H\AppData\Local\Temp\pip-install-06_988jz\hic-straw_aa7b592d70914d3b886a3aa3d4054df1\src\straw.h(74): warning C4244: 'argument': conversion from '__int64' to 'int', possible loss of data src/straw.cpp(338): warning C4267: 'initializing': conversion from 'size_t' to 'int32_t', possible loss of data src/straw.cpp(340): warning C4267: '=': conversion from 'size_t' to 'int32_t', possible loss of data src/straw.cpp(1023): warning C4244: 'return': conversion from 'uint64_t' to 'long', possible loss of data src/straw.cpp(1286): warning C4244: 'argument': conversion from 'int64_t' to 'int32_t', possible loss of data src/straw.cpp(1396): warning C4244: 'initializing': conversion from 'int64_t' to 'int32_t', possible loss of data src/straw.cpp(1397): warning C4244: 'initializing': conversion from 'int64_t' to 'int32_t', possible loss of data src/straw.cpp(1398): error C2131: expression did not evaluate to a constant src/straw.cpp(1398): note: failure was caused by a read of a variable outside its lifetime src/straw.cpp(1398): note: see usage of 'numRows' src/straw.cpp(1398): error C2131: expression did not evaluate to a constant src/straw.cpp(1398): note: failure was caused by a read of a variable outside its lifetime src/straw.cpp(1398): note: see usage of 'numCols' src/straw.cpp(1401): error C3863: array type 'float [numRows][numCols]' is not assignable src/straw.cpp(1407): warning C4244: 'initializing': conversion from 'int64_t' to 'int32_t', possible loss of data src/straw.cpp(1408): warning C4244: 'initializing': conversion from 'int64_t' to 'int32_t', possible loss of data src/straw.cpp(1410): error C3863: array type 'float [numRows][numCols]' is not assignable src/straw.cpp(1413): warning C4244: '=': conversion from 'int64_t' to 'int32_t', possible loss of data src/straw.cpp(1414): warning C4244: '=': conversion from 'int64_t' to 'int32_t', possible loss of data src/straw.cpp(1416): error C3863: array type 'float [numRows][numCols]' is not assignable src/straw.cpp(1526): error C2131: expression did not evaluate to a constant src/straw.cpp(1526): note: failure was caused by a read of a variable outside its lifetime src/straw.cpp(1526): note: see usage of 'this' src/straw.cpp(1530): error C3863: array type 'chromosome ['function']' is not assignable src/straw.cpp(1690): error C2017: illegal escape sequence src/straw.cpp(1690): error C2001: newline in constant src/straw.cpp(1694): error C2143: syntax error: missing ';' before '}' error: command 'C:\\Program Files\\Microsoft Visual Studio\\2022\\Community\\VC\\Tools\\MSVC\\14.33.31629\\bin\\HostX86\\x64\\cl.exe' failed with exit code 2 [end of output]note: This error originates from a subprocess, and is likely not a problem with pip.
ERROR: Failed building wheel for hic-straw
Running setup.py clean for hic-straw
Failed to build hic-straw
Installing collected packages: pybind11, hic-straw
Attempting uninstall: hic-straw
Found existing installation: hic-straw 0.0.6 Uninstalling hic-straw-0.0.6: Successfully uninstalled hic-straw-0.0.6Running setup.py install for hic-straw ... error
error: subprocess-exited-with-error
× Running setup.py install for hic-straw did not run successfully.
│ exit code: 1
╰─> [40 lines of output]
running install D:\apps\anaconda3\envs\plus\lib\site-packages\setuptools\command\install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build running build_ext building 'hicstraw' extension creating build creating build\temp.win-amd64-3.8 creating build\temp.win-amd64-3.8\Release creating build\temp.win-amd64-3.8\Release\src "C:\Program Files\Microsoft Visual Studio\2022\Community\VC\Tools\MSVC\14.33.31629\bin\HostX86\x64\cl.exe" /c /nologo /O2 /W3 /GL /DNDEBUG /MD -ID:\apps\anaconda3\envs\plus\lib\site-packages\pybind11\include -ID:\apps\anaconda3\envs\plus\lib\site-packages\pybind11\include -ID:\apps\anaconda3\envs\plus\include -ID:\apps\anaconda3\envs\plus\Include "-IC:\Program Files\Microsoft Visual Studio\2022\Community\VC\Tools\MSVC\14.33.31629\include" "-IC:\Program Files\Microsoft Visual Studio\2022\Community\VC\Tools\MSVC\14.33.31629\ATLMFC\include" "-IC:\Program Files\Microsoft Visual Studio\2022\Community\VC\Auxiliary\VS\include" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\10\\include\10.0.19041.0\\um" "-IC:\Program Files (x86)\Windows Kits\10\\include\10.0.19041.0\\shared" "-IC:\Program Files (x86)\Windows Kits\10\\include\10.0.19041.0\\winrt" "-IC:\Program Files (x86)\Windows Kits\10\\include\10.0.19041.0\\cppwinrt" "-IC:\Program Files (x86)\Windows Kits\NETFXSDK\4.8\include\um" -I%INCLUDE% -ID:\apps\anaconda3\Library\include -ID:\apps\anaconda3\Library\include /EHsc /Tpsrc/straw.cpp /Fobuild\temp.win-amd64-3.8\Release\src/straw.obj /EHsc /DVERSION_INFO=\\\"1.3.1\\\" straw.cpp C:\Users\Liu.D.H\AppData\Local\Temp\pip-install-06_988jz\hic-straw_aa7b592d70914d3b886a3aa3d4054df1\src\straw.h(74): warning C4244: 'argument': conversion from '__int64' to 'int', possible loss of data src/straw.cpp(338): warning C4267: 'initializing': conversion from 'size_t' to 'int32_t', possible loss of data src/straw.cpp(340): warning C4267: '=': conversion from 'size_t' to 'int32_t', possible loss of data src/straw.cpp(1023): warning C4244: 'return': conversion from 'uint64_t' to 'long', possible loss of data src/straw.cpp(1286): warning C4244: 'argument': conversion from 'int64_t' to 'int32_t', possible loss of data src/straw.cpp(1396): warning C4244: 'initializing': conversion from 'int64_t' to 'int32_t', possible loss of data src/straw.cpp(1397): warning C4244: 'initializing': conversion from 'int64_t' to 'int32_t', possible loss of data src/straw.cpp(1398): error C2131: expression did not evaluate to a constant src/straw.cpp(1398): note: failure was caused by a read of a variable outside its lifetime src/straw.cpp(1398): note: see usage of 'numRows' src/straw.cpp(1398): error C2131: expression did not evaluate to a constant src/straw.cpp(1398): note: failure was caused by a read of a variable outside its lifetime src/straw.cpp(1398): note: see usage of 'numCols' src/straw.cpp(1401): error C3863: array type 'float [numRows][numCols]' is not assignable src/straw.cpp(1407): warning C4244: 'initializing': conversion from 'int64_t' to 'int32_t', possible loss of data src/straw.cpp(1408): warning C4244: 'initializing': conversion from 'int64_t' to 'int32_t', possible loss of data src/straw.cpp(1410): error C3863: array type 'float [numRows][numCols]' is not assignable src/straw.cpp(1413): warning C4244: '=': conversion from 'int64_t' to 'int32_t', possible loss of data src/straw.cpp(1414): warning C4244: '=': conversion from 'int64_t' to 'int32_t', possible loss of data src/straw.cpp(1416): error C3863: array type 'float [numRows][numCols]' is not assignable src/straw.cpp(1526): error C2131: expression did not evaluate to a constant src/straw.cpp(1526): note: failure was caused by a read of a variable outside its lifetime src/straw.cpp(1526): note: see usage of 'this' src/straw.cpp(1530): error C3863: array type 'chromosome ['function']' is not assignable src/straw.cpp(1690): error C2017: illegal escape sequence src/straw.cpp(1690): error C2001: newline in constant src/straw.cpp(1694): error C2143: syntax error: missing ';' before '}' error: command 'C:\\Program Files\\Microsoft Visual Studio\\2022\\Community\\VC\\Tools\\MSVC\\14.33.31629\\bin\\HostX86\\x64\\cl.exe' failed with exit code 2 [end of output]note: This error originates from a subprocess, and is likely not a problem with pip.
WARNING: No metadata found in d:\apps\anaconda3\envs\plus\lib\site-packages
Rolling back uninstall of hic-straw
Moving to d:\apps\anaconda3\envs\plus\lib\site-packages\hic_straw-0.0.6.dist-info\
from D:\apps\anaconda3\envs\plus\Lib\site-packages\~ic_straw-0.0.6.dist-info
Moving to d:\apps\anaconda3\envs\plus\lib\site-packages\straw\
from D:\apps\anaconda3\envs\plus\Lib\site-packages\~traw
error: legacy-install-failure
× Encountered error while trying to install package.
╰─> hic-straw
note: This is an issue with the package mentioned above, not pip.
hint: See above for output from the failure.
(plus) D:\code\python\hicplus>
Desktop (please complete the following information):
- OS: Microsoft Windows [Version 10.0.22000.856]
- Version 1.3.1 from pypi
Additional context See #112 (comment) https://github.com/aidenlab/straw/issues/112#issuecomment-1222599863 also.
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liudonghua123
fazhang-master
Describe the bug I tried to use pip to install this package on windows, but I got the following errors.
To Reproduce Steps to reproduce the behavior:
Expected behavior The installation should fine.
Screenshots
Desktop (please complete the following information):
Additional context See https://github.com/aidenlab/straw/issues/112#issuecomment-1222599863 also.