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aidenlab / straw

Extract data quickly from Juicebox via straw
MIT License
62 stars 36 forks source link

Small test data #44

Closed joachimwolff closed 4 years ago

joachimwolff commented 4 years ago

Hi,

I would like to implement support for the hic format for Galaxy (https://github.com/galaxyproject/galaxy). For this I need test data for a functional test if the file format detection is working as it should. Do you have any hic file with a file size < 1MB that I could use for this purpose? I looked in your repository here, but it seems you don't have test cases? And in the ipython notebook, the URL: https://hicfiles.s3.amazonaws.com/hiseq/gm12878/in-situ/HIC001.hic is given, but I only get a ERROR 403: Forbidden error using wget.

Best,

Joachim

sa501428 commented 4 years ago

Hey @joachimwolff Would be great to see support for this on Galaxy! Our test sets tend to be larger but I've uploaded a smaller .hic file that's 5MB here: https://bcm.box.com/v/juicer-tools-testing

Note that this test file only has two resolutions, 2.5MB and 100KB.