segmentation fault

[dawe]

Describe the bug straw aborts for a stoi issue

To Reproduce I have compiled straw on my Mac (tried also with the binary version distributed here) and run it on .hic data provided by a collaborator

$ ~/src/straw/C++/straw NONE $i 19 19 10000 BP
libc++abi.dylib: terminating with uncaught exception of type std::invalid_argument: stoi: no conversion

Desktop (please complete the following information):

$ uname -a
Darwin C0004398.local 19.3.0 Darwin Kernel Version 19.3.0: Thu Jan  9 20:58:23 PST 2020; root:xnu-6153.81.5~1/RELEASE_X86_64 x86_64

[nchernia]

Can you check that the hic file is valid, e.g. by loading it into Juicebox? Also make sure the variable $i is actually getting replaced by the file name.

On Mon, Mar 23, 2020 at 2:12 PM Davide Cittaro notifications@github.com wrote:

Describe the bug straw aborts for a stoi issue

To Reproduce I have compiled straw on my Mac (tried also with the binary version distributed here) and run it on .hic data provided by a collaborator

$ ~/src/straw/C++/straw NONE $i 19 19 10000 BP libc++abi.dylib: terminating with uncaught exception of type std::invalid_argument: stoi: no conversion

Desktop (please complete the following information):

$ uname -a Darwin C0004398.local 19.3.0 Darwin Kernel Version 19.3.0: Thu Jan 9 20:58:23 PST 2020; root:xnu-6153.81.5~1/RELEASE_X86_64 x86_64

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[dawe]

The file can be loaded in Juicebox and the variable is correctly substituted. Since this is the first time I use straw, does dumping matrix from juicebox produces the same results?

[dawe]

Solved. the last two arguments were swapped (10000 BP in place of BP 10000). It works