aidenlab / straw

Extract data quickly from Juicebox via straw
MIT License
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-bash: ./straw: Permission denied #54

Closed LucasPhilipp closed 3 years ago

LucasPhilipp commented 3 years ago

Hello. I am an undergrad at the University of British Columbia. I am trying to extract contact probabilities from a .hic file and store them as a 2d array or similar. Any help is appreciated! :)

I use Mac. So far I have downloaded the binary from: https://github.com/aidenlab/straw/blob/master/bin/Mac/straw navigated to the downloads folder in terminal my data data.hic is also located in the downloads folder

i use the following terminal command: ./straw NONE data.hic 1 1 BP 1000000 > output.txt

and I get the following message in terminal: -bash: ./straw: Permission denied

I'm not sure what this means... Any suggestions would be appreciated. Thanks in advance!

nchernia commented 3 years ago

try: chmod 755 straw

On Wed, Oct 28, 2020 at 3:49 PM LucasPhilipp notifications@github.com wrote:

Hello. I am an undergrad at the University of British Columbia. I am trying to extract contact probabilities from a .hic file and store them as a 2d array or similar. Any help is appreciated! :)

I use Mac. So far I have downloaded the binary from: https://github.com/aidenlab/straw/blob/master/bin/Mac/straw navigated to the downloads folder in terminal my data data.hic is also located in the downloads folder

i use the following terminal command: ./straw NONE data.hic 1 1 BP 1000000 > output.txt

and I get the following message in terminal: -bash: ./straw: Permission denied

I'm not sure what this means... Any suggestions would be appreciated. Thanks in advance!

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-- Neva Cherniavsky Durand, Ph.D. | she, her, hers Assistant Professor | Molecular and Human Genetics Aiden Lab | Baylor College of Medicine www.aidenlab.org

LucasPhilipp commented 3 years ago

Thank you! All is working now :)