MOCHA needs getters and subsetters

aifimmunology / MOCHA

R package for single-cell Open Chromatin Identification & Downstream Analysis

https://aifimmunology.github.io/MOCHA/

GNU General Public License v3.0

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MOCHA needs getters and subsetters #109

Open imran-aifi opened 1 year ago

imran-aifi commented 1 year ago

Subsetting operations on MultiAssayExp and SummarizedExp objects don't deliver desired results for getting open tiles, or subsetting by samples or cell populations.

Add getters e.g. getOpenTiles that can work on either a SummarizedExperiment or MultiAssayExperiment.
Rework function subsetMOCHAObject - needs testing
Add vignettes to make these uses strongly recommended.
- update this old vignette