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aifimmunology / MOCHA

R package for single-cell Open Chromatin Identification & Downstream Analysis
https://aifimmunology.github.io/MOCHA/
GNU General Public License v3.0
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Parallelization overhaul #114

Closed markphillippebworth closed 1 year ago

markphillippebworth commented 1 year ago

We need to merge this together because the code in main doesn't work for large datasets.

We still need to implement the parallelization strategy from cellOpenTiles and getSampleTileMatrix to extractRegions.

Affects:

R/callOpenTiles.R R/callTilesBySample.R R/estimate_differential_accessibility.R R/extractRegion.R R/getCoAccessibleLinks.R R/getCoverage.R R/getDifferentialAccessibleTiles.R R/getPopFrags.R R/getSampleTileMatrix.R R/plottingUtils.R R/singlePopulationConsensusTiles.R R/singlePopulationSampleTileMatrix.R R/testCoAccessibility.R R/zi_spearman.R