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aifimmunology / MOCHA

R package for single-cell Open Chromatin Identification & Downstream Analysis
https://aifimmunology.github.io/MOCHA/
GNU General Public License v3.0
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Plotregion function genome location doesn't match with the location in genome browser #138

Closed ziyuanhe closed 5 months ago

ziyuanhe commented 1 year ago

DAP was called at 'chr4:122617500-122617999' for IL21 preRA_tea_seq_cd4tna_peak_regions_preRAvsHealthy_IL21.pdf

https://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&lastVirtModeType=default&lastVirtModeExtraState=&virtModeType=default&virtMode=0&nonVirtPosition=&position=chr4%3A122616063%2D122619437&hgsid=1662213964_vJLpiUbpAj793cAuiVHmLvrjzIQQ

markphillippebworth commented 5 months ago

This is now fixed. We've re-written the plotting function to avoid ggbio, which is no longer being developed and was the cause of the issue.