Re-wrote major portions of plotRegion so that it would not rely on ggbio for gene plots.
We generate our own gene plots, replying on only ggplot and ggrepel.
These plots are then combined with the data, and the ideogram (from ggbio) using cowplot.
Additional modifications were made to extractRegions to fix a bug, and to StringsToGranges (just to make it more robus. It removes commas from the String so that you can copy and paste chromosome locations directly from the UCSC genome browser or other locations.
Re-wrote major portions of plotRegion so that it would not rely on ggbio for gene plots.
We generate our own gene plots, replying on only ggplot and ggrepel.
These plots are then combined with the data, and the ideogram (from ggbio) using cowplot.
Additional modifications were made to extractRegions to fix a bug, and to StringsToGranges (just to make it more robus. It removes commas from the String so that you can copy and paste chromosome locations directly from the UCSC genome browser or other locations.