Closed corneliusroemer closed 2 years ago
snipit alignment.fasta --sort-by-id to sort by sequence name
snipit alignment.fasta --sort-by-id
snipit alignment.fasta --sort-by-mutations 27788,27384,21570,23535,8303,1627,1931,16935 to sort by bases at position 27788, then break ties by nuc at mutation 27384, 21570 etc.
snipit alignment.fasta --sort-by-mutations 27788,27384,21570,23535,8303,1627,1931,16935
Usage
snipit alignment.fasta --sort-by-idto sort by sequence namesnipit alignment.fasta --sort-by-mutations 27788,27384,21570,23535,8303,1627,1931,16935to sort by bases at position 27788, then break ties by nuc at mutation 27384, 21570 etc.