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aineniamh / snipit

snipit: summarise snps relative to your reference sequence
GNU General Public License v3.0
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Suggestion: Writing out SNPs of a specific region in CSV file #30

Open JoseJimenezG31 opened 1 year ago

JoseJimenezG31 commented 1 year ago

Hello @aineniamh,

I have been using this program and so far I love it. I also like the idea of exporting a CSV file with all the SNPs detected.

I'm using genomic sequences as input and the option --include-positions to plot mutations on a specific region. However, when creating the CSV file, it shows mutations observed in the whole genomic sequences. Could it be possible to create a CSV file showing SNPs located in an specific range or positions?

Thanks for developing this useful tool!

liamxg commented 8 months ago

Dear @JoseJimenezG31,

me too.