aineniamh / snipit

snipit: summarise snps relative to your reference sequence
GNU General Public License v3.0
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Can we plot like this? #35

Open liamxg opened 8 months ago

liamxg commented 8 months ago

Dear @corneliusroemer @aineniamh,

I would like to plot like the figure below, is this possible using snipit?

image
ammaraziz commented 7 months ago

That's a snipit plot with added annotations of the genes/regions. You can do this yourself with Inkscape. Make sure to output pdf or svg for a easier time.

I do agree it would be great if snipit can ingest a gff/gtf file to add such annotations.... I might try to do this but don't hold your breath.

liamxg commented 7 months ago

Dear @ammaraziz,

Cool! wait for your good news.

aineniamh commented 7 months ago

Snipit does have the ability to parse a genbank file (I added it in when i'd originally been thinking about amino acid level stuff for snipit, but then got distracted with something else and never followed up with it). May be something to revisit in the future- but possibly low priority!

liamxg commented 7 months ago

got it.