Open aineniamh opened 4 weeks ago
so it appears squirrel doesn't break if given a genome with just a single N- it just fails to map it and produces a black alignment file. not ideal. should it break, or should it produce a fasta file of Ns the length of the genome?
so it appears squirrel doesn't break if given a genome with just a single N- it just fails to map it and produces a black alignment file. not ideal. should it break, or should it produce a fasta file of Ns the length of the genome?