First paragraph: I believe it's clear that we mean reproducibility of the analysis and not reproducibility of the experiment. I think the last sentence in the 1st paragraph can be deleted.
Suggested:
Here we describe the tools and sketch an outline for writing a fully reproducible paper. In this context, reproducible means that any researcher with access to the data and code will be able to reproduce published data analyses exactly.
Should that title be capitalized?
First paragraph: I believe it's clear that we mean reproducibility of the analysis and not reproducibility of the experiment. I think the last sentence in the 1st paragraph can be deleted.
Suggested: Here we describe the tools and sketch an outline for writing a fully reproducible paper. In this context, reproducible means that any researcher with access to the data and code will be able to reproduce published data analyses exactly.