torchani/aev.py:195: UserWarning: This overload of nonzero is deprecated:
nonzero()
Consider using one of the following signatures instead:
nonzero(*, bool as_tuple) (Triggered internally at /opt/conda/conda-bld/pytorch_1607370141920/work/torch/csrc/utils/python_arg_parser.cpp:882.)
in_cutoff = (distances <= cutoff).nonzero()
Overload of nonzero deprecated in PyTorch
1.7
: