airr-community / airr-standards

AIRR Community Data Standards
https://docs.airr-community.org
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Define J gene donor splice site #571

Closed bussec closed 2 years ago

bussec commented 2 years ago

AlleleDescription.j_donor_splice aims to define the donor splice site 3' of a J gene. However, as the actual splicing occurs between two nucleotides, it needs to be defined whether the referenced position is the last exonic or first intronix nucleotide.

williamdlees commented 2 years ago

Changed the description to: Co-ordinate (in the sequence field) of the final 3' nucleotide of the J-REGION (J-genes only)