Embedding AIRR annotations in scanpy/scverse objects

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AIRR Community Data Standards

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Embedding AIRR annotations in scanpy/scverse objects #620

Closed bcorrie closed 1 year ago

bcorrie commented 2 years ago

Hi All, after the AIRR Meeting I found this rather interesting discussion going on in the scverse (scanpy/scirpy) world around single cell file formats (https://github.com/scverse/scirpy/issues/327). II thought I would link the two discussions in case anyone here is interested in contributing to the discussion. Now seems to be the time to try and get this correct with AIRR v1.4 and the Cell/Expression specs being released.

javh commented 1 year ago

Initial release of the scirpy structure is released. We can discuss further in those repos.