airr-community / airr-standards

AIRR Community Data Standards
https://docs.airr-community.org
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Consistent list of possible Ig/TCR loci throughout the schema #671

Closed bussec closed 1 year ago

bussec commented 1 year ago

Field that encode Ig/TCR loci are implemented as controlled vocabularies (i.e., enum) throughout the schema. However, the list of available values differs between Rearrangement.locus, PCRTarget.pcr_target_locus, AlleleDescription.locus and GermlineSet.locus, as the former two contain IGI as additional option (which is an additional Ig light chain locus in bony fish). Whether by addition or removal, the enum lists should be consistent throughout the schema.

javh commented 1 year ago

Addressed in #674.