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airr-community / airr-standards

AIRR Community Data Standards
https://docs.airr-community.org
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x-airr tags need to be added to germline objects #675

Closed williamdlees closed 7 months ago

williamdlees commented 1 year ago

see comment from @javh below.

Because this will initially be an experimental release we might be able to push back sorting out the proper x-airr tags. But, to answer your question, if you look at Rearrangement:sequence_id you will see:

sequence_id: x-airr: adc-query-support: true identifier: true

Denoting whether the field is required and what its purpose is in the AIRR Data Model and ADC contexts. We'll need to sort that our for the various _id fields at some point. Maybe _ref too, but I don't know how they'll fit in.

bcorrie commented 8 months ago

@williamdlees has this been done? I haven't checked, feels like this might have been addressed already and can be closed?

javh commented 7 months ago

This was done. I'm sure we'll need to give everything a pass over for v2.0, but we can close this.