airr-community / airr-standards

AIRR Community Data Standards
https://docs.airr-community.org
Creative Commons Attribution 4.0 International
35 stars 23 forks source link

Include co-ordinates of CDRs explicitly #676

Closed williamdlees closed 1 year ago

williamdlees commented 1 year ago

This removes reliance on the IMGT alignment to place them. Change "IMGT alignment" to "sequence alignment" and make it clear that this alignment places the CDRs at specific co-ordinates in the aligned sequence (There are cases where this does not happen in IMGT's alignment, e.g. inserted codons in macaque IG sets).

javh commented 1 year ago

This looks done. @williamdlees ?

williamdlees commented 1 year ago

It's done.