In the miairr/data_elements.rst, we mention having six high-level categories: Study and subject, sample collection, sample processing and sequencing, raw sequences, processing of sequence data, and processed AIRR sequences. However, the table only presents five levels:
1/study
1/subject
1/diagnosis and intervention
2/sample
3/process (cell)
3/process (nucleic acid)
3/process (nucleic acid [pcr])
3/process (sequencing)
4/data (raw reads)
5/process (computational)
5/data (processed sequence)
At first, it look like 5/data (processed sequence) should be 6/data (processed sequence), but looking at the TSV-file I see that 5/data (processed sequence) is all about registering the V(D)J germline reference database, which aligns it with 5/process (computational) as it is relevant for the software registered in Software tools and version numbers.
Is splitting the table in miairr/data_elements.rst into sections corresponding to each high-level category possible? This will prevent endless scrolling and make the grouping more clear. And we can explain the occult and enigmatic 6th level.
In the
miairr/data_elements.rst
, we mention having six high-level categories: Study and subject, sample collection, sample processing and sequencing, raw sequences, processing of sequence data, and processed AIRR sequences. However, the table only presents five levels:At first, it look like
5/data (processed sequence)
should be6/data (processed sequence)
, but looking at the TSV-file I see that5/data (processed sequence)
is all about registering the V(D)J germline reference database, which aligns it with5/process (computational)
as it is relevant for the software registered inSoftware tools and version numbers
.Is splitting the table in
miairr/data_elements.rst
into sections corresponding to each high-level category possible? This will prevent endless scrolling and make the grouping more clear. And we can explain the occult and enigmatic 6th level.