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SW Tools Group - Repertoire Credibility Tool
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Generate mark down error #36

Closed bcorrie closed 2 months ago

bcorrie commented 2 months ago

I get the following on some repertoires - See #35 for details on which repertoires.

processing file: _main.Rmd

Quitting from lines at lines 293-303 [unnamed-chunk-9] (_main.Rmd) Error in wrap_dims(): ! Need 5 panels, but together nrow and ncol only provide 3. ℹ Please increase ncol and/or nrow. Backtrace:

  1. base::local(...)
  2. bookdown (local) ``(...)
  3. bookdown:::render_cur_session(...)
  4. rmarkdown::render(main, output_format, ..., clean = clean, envir = envir)
  5. knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet) ...
  6. layout$setup(data, plot$data, plot$plot_env)
  7. ggplot2 (local) setup(..., self = self)
  8. self$facet$compute_layout(data, self$facet_params)
  9. ggplot2 (local) compute_layout(..., self = self)
  10. ggplot2::wrap_dims(n, params$nrow, params$ncol) Execution halted
ssnn-airr commented 2 months ago

@bcorrie this issued should be fixed now. Please try again.

bcorrie commented 2 months ago

For the record, these are the repertoires this failed on:

100 sequences, Sample ID: 1434_exp_RLQ_pos, Failed 10,000 sequences, Sample ID: p1437_CD8ifny Failed

Both of these now work so I think this issue can be marked done.