vtam incompatible with cutadapt==3.0

aitgon / vtam

MIT License

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vtam incompatible with cutadapt==3.0 #4

Closed aitgon closed 3 years ago

aitgon commented 4 years ago

It looks like vtam and more precisely the "sortreads" is incompatible with the latest cutadapt==3.0. version Until being fixed, it must be make sure that the cutadapt 2.10 is used.

ulysse06 commented 3 years ago

Hi, I tried but couldn't reproduce any error. On my side it worked with both cutadapt 2.10 and 3.4.

When I run the following command from the tutorial : vtam sortreads --fastainfo asper1/run1_mfzr/fastainfo.tsv --fastadir asper1/run1_mfzr/merged --sorteddir asper1/run1_mfzr/sorted -v --log asper1/vtam.log it seems to behave as expected.

Could you provide me with more specific information to reproduce the bug?

aitgon commented 3 years ago

I have tested and it looks like VTAM is compatible with cutadapt 3.4. Maybe it was just a problem of cutadapt 3.0.