Closed lee1043 closed 5 years ago
Describe the bug
Updated version of cdms2
which use Python 3 has issue eofs
(version below).
# Name Version Build Channel
cdms2 3.1.0.2018.11.14.22.42.g7e8de8f py36h481b005_0 cdat/label/nightly
eofs 1.3.0 py_1 conda-forge
To Reproduce
python simple_test.py (use below two files, rename to remove .txt
)
simple_test.py.txt
sample_input.nc.txt
Error message:
Traceback (most recent call last):
File "simple_test.py", line 8, in <module>
solver = Eof(d)
File "/export_backup/lee1043/anaconda2/envs/pmp_nightly_20181128/lib/python3.6/site-packages/eofs/cdms.py", line 165, in __init__
self._dataset_name = cdms2_name(dataset).replace(' ', '_')
File "/export_backup/lee1043/anaconda2/envs/pmp_nightly_20181128/lib/python3.6/site-packages/eofs/tools/cdms.py", line 149, in cdms2_name
return filter(None, names)[0]
TypeError: 'filter' object is not subscriptable
Expected behavior It should return below image without having any error. It has been okay using previous version of cdms2 as below:
# Name Version Build Channel
cdms2 3.0.2018.08.30.01.24.ge41c556 py27h14c3975_0 cdat/label/nightly
Desktop (please complete the following information):
`conda info`
``` active environment : pmp_nightly_20181128 active env location : /export_backup/lee1043/anaconda2/envs/pmp_nightly_20181128 shell level : 2 user config file : /export_backup/lee1043/.condarc populated config files : /export_backup/lee1043/.condarc conda version : 4.5.11 conda-build version : not installed python version : 2.7.13.final.0 base environment : /export_backup/lee1043/anaconda2 (writable) channel URLs : https://repo.anaconda.com/pkgs/main/linux-64 https://repo.anaconda.com/pkgs/main/noarch https://repo.anaconda.com/pkgs/free/linux-64 https://repo.anaconda.com/pkgs/free/noarch https://repo.anaconda.com/pkgs/r/linux-64 https://repo.anaconda.com/pkgs/r/noarch https://repo.anaconda.com/pkgs/pro/linux-64 https://repo.anaconda.com/pkgs/pro/noarch package cache : /export_backup/lee1043/anaconda2/pkgs /export_backup/lee1043/.conda/pkgs envs directories : /export_backup/lee1043/anaconda2/envs /export_backup/lee1043/.conda/envs platform : linux-64 user-agent : conda/4.5.11 requests/2.14.2 CPython/2.7.13 Linux/2.6.32-696.30.1.el6.x86_64 rhel/6.10 glibc/2.12 UID:GID : 55431:1026 netrc file : None offline mode : False ```
`conda list --show-channel-urls`
```
# packages in environment at /export_backup/lee1043/anaconda2/envs/pmp_nightly_20181128:
#
# Name Version Build Channel
asn1crypto 0.24.0 py36_3 cdat-forge
blas 1.0 mkl defaults
bokeh 0.13.0 py36_0 cdat-forge
bzip2 1.0.6 h470a237_2 cdat-forge
ca-certificates 2018.8.24 ha4d7672_0 conda-forge
cdat_info 8.0.2018.10.30.14.29.gc2e9630 py36_0 cdat/label/nightly
cdms2 3.1.0.2018.11.14.22.42.g7e8de8f py36h481b005_0 cdat/label/nightly
cdp 1.3.3.2018.11.14.15.52 py36_0 cdat/label/nightly
cdtime 3.1.0.2018.11.01.17.45.gb8c370e py36h9ac9557_0 cdat/label/nightly
cdutil 8.0.2018.11.12.19.20.g3bd6383 py_0 cdat/label/nightly
certifi 2018.8.24 py36_1 conda-forge
cffi 1.11.5 py36h5e8e0c9_1 cdat-forge
chardet 3.0.4 py36_3 cdat-forge
cia 0.0.6 0 cdat-forge
clapack 3.2.1 h470a237_1 cdat-forge
click 6.7 py_1 cdat-forge
cloudpickle 0.5.5 py_0 cdat-forge
cryptography 2.3.1 py36hdffb7b8_0 cdat-forge
cryptography-vectors 2.3.1 py36_0 cdat-forge
curl 7.61.0 h93b3f91_2 cdat-forge
cycler 0.10.0 py36h93f1223_0 defaults
cytoolz 0.9.0.1 py36h470a237_0 cdat-forge
dask 0.19.1 py_0 cdat-forge
dask-core 0.19.1 py_0 cdat-forge
dbus 1.13.2 h714fa37_1 defaults
decorator 4.3.0 py36_0 defaults
distarray 2.12.2 py36_0 cdat-forge
distributed 1.23.1 py36_0 cdat-forge
dv3d 8.0.2018.10.25.14.21.g4afbd51 py_0 cdat/label/nightly
eofs 1.3.0 py_1 conda-forge
esmf 7.1.0r 1 cdat-forge
esmpy 7.1.0r py36_1 cdat-forge
expat 2.2.5 hfc679d8_2 cdat-forge
ffmpeg 4.0 hc8c182b_0 cdat-forge
fontconfig 2.12.6 h49f89f6_0 defaults
freetype 2.8.1 hfa320df_1 cdat-forge
future 0.16.0 py36_2 cdat-forge
g2clib 1.6.0 3 cdat-forge
genutil 8.1.2018.07.24.00.41.gc18c308.npy1.14 py36hb3ffb1f_0 cdat/label/nightly
glib 2.56.1 h000015b_0 defaults
gmp 6.1.2 hfc679d8_0 cdat-forge
gnutls 3.5.19 h2a4e5f8_1 cdat-forge
gst-plugins-base 1.14.0 hbbd80ab_1 defaults
gstreamer 1.14.0 hb453b48_1 defaults
hdf4 4.2.13 h951d187_2 cdat-forge
hdf5 1.10.1 2 cdat-forge
heapdict 1.0.0 py36_0 cdat-forge
icu 58.2 h9c2bf20_1 defaults
idna 2.7 py36_2 cdat-forge
intel-openmp 2018.0.3 0 cdat-forge
ipython_genutils 0.2.0 py36_0 defaults
jasper 1.900.1 hff1ad4c_5 cdat-forge
jinja2 2.10 py_1 cdat-forge
jpeg 9c h470a237_1 cdat-forge
jsonschema 2.6.0 py36_0 defaults
jupyter_core 4.4.0 py36_0 defaults
kiwisolver 1.0.1 py36hf484d3e_0 defaults
krb5 1.14.6 0 cdat-forge
lapack 3.6.1 1 cdat-forge
libcdms 3.0.2018.10.17.21.09.g4f79235 h9ac9557_0 cdat/label/nightly
libcf 3.0.2018.06.28.01.19.g994aa30 py36h14c3975_0 cdat/label/nightly
libdrs 3.0.2018.10.18.21.40.g36264ac h9ac9557_0 cdat/label/nightly
libdrs_f 3.0.2018.10.18.21.40.g36264ac h9ac9557_0 cdat/label/nightly
libffi 3.2.1 hfc679d8_5 cdat-forge
libgcc 7.2.0 h69d50b8_2 cdat-forge
libgcc-ng 8.2.0 hdf63c60_1 defaults
libgfortran 3.0.0 1 cdat-forge
libgfortran-ng 7.2.0 hdf63c60_3 cdat-forge
libiconv 1.15 h470a237_3 cdat-forge
libnetcdf 4.6.1 2 cdat-forge
libpng 1.6.35 ha92aebf_2 cdat-forge
libssh2 1.8.0 h5b517e9_2 cdat-forge
libstdcxx-ng 7.2.0 hdf63c60_3 cdat-forge
libtiff 4.0.9 he6b73bb_2 cdat-forge
libxcb 1.13 h1bed415_1 defaults
libxml2 2.9.8 h26e45fe_1 defaults
locket 0.2.0 py_2 cdat-forge
markupsafe 1.0 py36h470a237_1 cdat-forge
matplotlib 2.2.2 py36h0e671d2_1 defaults
mkl 2018.0.3 1 cdat-forge
mkl_fft 1.0.6 py36_0 cdat-forge
mkl_random 1.0.1 py36_0 cdat-forge
modes_of_variability-v0.1-68 g37ed74e
Hi @lee1043 - thanks for moving this issue over. I've made a fix on the v1.3.x branch (#102), and updated the CI testing so that the cdms interface is tested on Python 3.6 and 3.7 as well as 2.7. I have not yet made a new release containing the fix, but I intend to to a v1.3.1 very soon.
@ajdawson Very nice, thank you for the immediate update. I look for release of v1.3.1, during the mean time I will use that branch.
I have made a v1.3.1 release with this fix. The PyPI package is uploaded, it will take a little time for the conda-forge package to be created and uploaded.
@ajdawson thank you!
https://github.com/CDAT/cdms/issues/294