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akcorut / kGWASflow

kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.
https://github.com/akcorut/kGWASflow/wiki
MIT License
28 stars 8 forks source link

is full `snakemake` required? or would `snakemake-minimal` suffice? #17

Open ctb opened 1 year ago

ctb commented 1 year ago

I noticed in your environment.yml file you install snakemake - curious about whether you need full snakemake or if snakemake-minimal would be sufficient. The advantage is that minimal is much smaller!

akcorut commented 12 months ago

Hi @ctb,

Sorry for my late reply. I was away the last couple of weeks and finally had time to go through the issues and test snakemake-minimal. First of all, thank you for the suggestion. Currently, the workflow seems to be working using snakemake-minimal without any problem. I have changed the environment.yaml with the commit 8f85998. I will run a couple more tests with snakemake-minimal before updating the conda version.

Best, Kivanc

ctb commented 12 months ago

awesome, thanks for getting back to me!